DisGeNET - a database of gene-disease associations

List of associated variants

Colorectal Carcinoma, C0009402

Source: GWASDB ×

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1260326	GCKR	0.645	0.600	2	27508073	missense variant	T/C;G	snv	0.63; 4.0E-06	0.68	25
rs780094	GCKR	0.658	0.400	2	27518370	intron variant	T/C	snv		0.67	24
rs3184504	SH2B3 ; ATXN2	0.572	0.600	12	111446804	missense variant	T/A;C;G	snv	0.67		24
rs1800562	LOC108783645 ; HFE	0.435	0.880	6	26092913	missense variant	G/A	snv	3.3E-02	3.8E-02	14
rs671	ALDH2	0.529	0.840	12	111803962	missense variant	G/A	snv	1.9E-02	5.8E-03	10
rs1535	FADS2	0.752	0.240	11	61830500	intron variant	A/G	snv		0.31	10
rs9939609	FTO	0.559	0.720	16	53786615	intron variant	T/A	snv		0.41	10
rs1799945	LOC108783645 ; HFE	0.452	0.760	6	26090951	missense variant	C/G;T	snv	0.11	0.10	10
rs2736100	TERT	0.550	0.880	5	1286401	3 prime UTR variant	C/A	snv		0.52	9
rs7903146	TCF7L2	0.554	0.680	10	112998590	intron variant	C/G;T	snv			8
rs10936599	MYNN	0.637	0.600	3	169774313	synonymous variant	C/T	snv	0.29	0.21	7
rs3024505		0.790	0.320	1	206766559	upstream gene variant	G/A	snv		0.11	6
rs6920220		0.742	0.440	6	137685367	intron variant	G/A	snv		0.16	6
rs1229984	ADH1B	0.570	0.560	4	99318162	missense variant	T/C;G	snv	0.90		6
rs3087243	CTLA4	0.623	0.720	2	203874196	downstream gene variant	G/A	snv		0.37	6
rs174550	FADS1 ; FADS2	0.925	0.160	11	61804006	5 prime UTR variant	T/C	snv		0.28	6
rs4246215	FADS2 ; FEN1	0.677	0.320	11	61796827	3 prime UTR variant	G/C;T	snv			6
rs6822844		0.689	0.520	4	122588266	regulatory region variant	G/T	snv		0.10	5
rs12654264	HMGCR	0.925	0.120	5	75352778	intron variant	A/T	snv		0.38	5
rs20541	IL13 ; TH2LCRR	0.585	0.720	5	132660272	missense variant	A/G	snv	0.72	0.77	5
rs11209026	IL23R	0.597	0.680	1	67240275	missense variant	G/A	snv	4.2E-02	4.6E-02	5
rs4149056	SLCO1B1	0.633	0.480	12	21178615	missense variant	T/C	snv	0.13	0.12	5
rs174537	TMEM258 ; MYRF	0.708	0.400	11	61785208	non coding transcript exon variant	G/T	snv		0.28	5
rs6734238		1.000	0.080	2	113083453	upstream gene variant	A/G	snv		0.39	4
rs2070600	AGER	0.561	0.760	6	32183666	missense variant	C/T	snv	5.3E-02	3.6E-02	4